PublicationsPeterson, T.A., Adadey, A., Santana-Cruz ,I., Sun, Y., Winder A, Kann, M.G., (2010) DMDM: Domain Mapping of Disease Mutations. Bioinformatics 26 (19), 2458-2459. [Abstract ] [Text ] [PDF] Carroll, HD, Kann, MG, Sheetlin, SL & Spouge, JL. (2010) Threshold Average Precision (TAP-k): A Measure of Retrieval Designed for Bioinformatics. Bioinformatics 26 (14), 1708-1713. [Abstract ] [PDF] Mort, M., Evani, U.S., Krishnan, V.G., Kamati, K.K., Baenziger, P.H., Bagchi, A., Peters, B.J., Sathyesh, R., Li, B., Sun, Y., Xue, B., Shah, N.H., Kann, M.G., Cooper, D.N., Radivojac, P. & Mooney, S.D. (2010) In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. Hum Mutat 31, 335-346. [Abstract ] [Text ] [PDF] Kann, M.G. (2010) Advances in translational bioinformatics: computational approaches for the hunting of disease genes. Briefings in bioinformatics 11, 96-110. [Abstract ] [Text ] [PDF] Alkan, C., Brudno, M., Eichler, E.E., Kann, M.G. & Sahinalp, S.C. (2010) PERSONAL GENOMICS - Session Introduction. Pac Symp Biocomput 15, 302-304. [Abstract ] [Text ] [PDF] Kann, M. G., Shoemaker, B. A., Panchenko, A. R. & Przytycka, T. M. (2009). Correlated evolution of interacting proteins: looking behind the mirrortree. J Mol Biol 385, 91-8. Radivojac, P., Baenziger, P. H., Kann, M. G., Mort, M. E., Hahn, M. W. & Mooney, S. D. (2008). Gain and loss of phosphorylation sites in human cancer. Bioinformatics 24, i241-7.
Kann, M. G. (2007). "Protein interactions and disease: computational
approaches to uncover the etiology of diseases." Brief Bioinform.
Singh, A., A. Olowoyeye, P. H. Baenziger, et al. "MutDB:
Update on development of tools for the biochemical analysis of genetic variation
" Nucleic Acids Res: Submitted to 2007 Database
Issue.
Kann, M. G., S. L. Sheetlin, Y. Park, et al. (2007). "The
identification of
complete domains within protein sequences using accurate E-values
for semi-global alignment." Nucleic Acids Res
35(14): 4678-85.
Kann, M. G., R. Jothi, P. F. Cherukuri, et al. (2007). "Predicting
protein domain interactions from coevolution of conserved regions." Proteins 67(4):
811-20
Valdivia-Granada, W. A., M. G. Kann and J. Malaga (2007).
"Transcriptional Interactions during smallpox infection and identification of early
infection biomarkers." Pac Symp Biocomput.: 100-111. Kann, M. G., P. A. Thiessen, A. R. Panchenko, et al. (2005). "A structure-based method for protein sequence alignment." Bioinformatics 21(8): 1451-6. [Abstract] [Text] [PDF]
Jothi, R., M. G. Kann and T. M. Przytycka (2005). "Predicting
protein-protein interaction by searching evolutionary tree automorphism space."
Bioinformatics 21 Suppl 1: i241-i250
Marino-Ramirez, L., M. G. Kann, B. A. Shoemaker, et al. (2005).
"Histone structure and nucleosome stability." Expert
Rev Proteomics 2(5): 719-29.
Valdivia-Granada, W. A., C. D. Keating, M. Kann, et al. (2005).
Detection of Encephalic and Hemorrhagic Viruses: Integration of Micro and Nano-fabrication
with Computational Tools. IEEE.International Conference on MEMS, NANO and Smart
Systems, IEEE.
Kann, M. and R. A. Goldstein (2004). OPTIMA: A new score
function for the detection of remote homologs. in Mathematical
Methods for Protein Structure Analysis and Design. Lectures Notes in Computer Science.
Springer-Verlag. Heidelberg: 99-107.
Kann, M. G. and R. A. Goldstein (2002). "Performance evaluation
of a new algorithm for the detection of remote homologs with sequence comparison."
Proteins 48(2): 367-76.
Kann, M., B. Qian and R. A. Goldstein (2000). "Optimization
of a new score function for the detection of remote homologs."
Proteins 41(4): 498-503.
Kann, M. and R. A. Goldstein (2000). Optimizing for Success:
A new score function for distantly related proteins. Fourth annual international
conference on computational molecular biology (RECOMB). Tokyo, Japan, ACM: 177-182
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